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Ok I just began scanning each individual author and it froze during one of the scans.  They were all EPUB's under this author.  I'm really not sure what to do now.  So there is no way to stop the scan once its started? 

I keep all my downloads in a "Books" folder.  They are all organized by author within this folder.  My Fire is OS 5.6.8.0.  I think what I will try next is to scan each subfolder(author) and not the entire book folder.  Only way to stop the scan is to uninstall elibrary and reinstall. 

I would say 95% of the books are Epub's.  A few MOBI's may be in there though.  I convert them all on Calibre first before I install them.  It seems that when I start a scan it never stops scanning.  Every time I try again it says that a scan is already in progress.  This could be 10 hours later.  Is there any way to stop a scan once its under way?  I have a Kindle Fire 8HD.  I have all my books on a 128GB SD disc.  Thank You for responding. 

I have several hundred books that are on my SD that are not found by scan.  Is there anything I can do?  Should I reinstall the missing books and try again.